Line 3 Necrotic local lesions tissues Read 1 and 2 - SRA

SRX15274478: Line 3 Necrotic local lesions tissues Read 1 and 2
1 ILLUMINA (Illumina HiSeq 2500) run: 314,003 spots, 156.8M bases, 74.1Mb downloads

Design: Moreno-Perez et al 2022

Submitted by: CENTRE FOR PLANT BIOTECHNOLOGY AND GENOMICS (CBGP UPM-INIA)

Study: Evolution and reversion of a resistance-breaking mutation virus PMMoV in Pepper L3 Resistant plants

PRJNA838011 • SRP375172 • All experiments • All runs

show Abstracthide Abstract

The stability of mutation M138N was analysed by 10 serial passagin in 5 L3 resistant plants. Appearance upon passaging of necrotic local lesions (NLL), indicating an effective L3 resistance, showed reversion to non-resistance-breaking phenotypes was common. The genetic structure at the CP gene in NLL lesions and systemically-infected leaves was analysed by Illumina deep sequencing (MiSeq run in 2x250bp paired-end reads).

Sample: Line 3 Necrotic local lesions tissues

SAMN28343251 • SRS13003802 • All experiments • All runs

Organism: Pepper mild mottle virus

Library:

Name: 8B_S8

Instrument: Illumina HiSeq 2500

Strategy: AMPLICON

Source: GENOMIC

Selection: RT-PCR

Layout: PAIRED

Runs: 1 run, 314,003 spots, 156.8M bases, 74.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR19210344	314,003	156.8M	74.1Mb	2022-07-01

ID:: 21802644

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